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SRX2104827: Whole genome shotgun sequencing of Salmonella enterica by Illumina NextSeq 500
1 ILLUMINA (NextSeq 500) run: 2.4M spots, 719.7M bases, 315.3Mb downloads

External Id: EXT00213604
Design: MiSeq deep shotgun sequencing of cultured isolate.
Submitted by: FDA Center for Food Safety and Applied Nutrition (CFSAN)
Study: GenomeTrakr Project: NY State Dept. of Health, Wadsworth Center
PRJNA183850 • SRP028607 • All experiments • All runs
show Abstracthide Abstract
Currently encompasses whole genome sequencing of cultured pathogens as part of a surveillance project for the rapid detection of outbreaks of foodborne illnesses
Sample:
SAMN03795321 • SRS1039590 • All experiments • All runs
Organism: Salmonella enterica subsp. enterica serovar 4,[5],12:i:-
Library:
Name: Salmonella enterica Nextera XT shotgun
Instrument: NextSeq 500
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Construction protocol: Illumina Nextera XT library created for Salmonella enterica.
Spot descriptor:
1  forward151  reverse

Pipeline: show...hide...
NameStepPrev StepProgramVersion
base caller0NULLRTA1.8.5
demultiplexer10Bcl2fastq2.1
Runs: 1 run, 2.4M spots, 719.7M bases, 315.3Mb
Run# of Spots# of BasesSizePublished
SRR41240572,410,846719.7M315.3Mb2016-09-02

ID:
3099607

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