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SRX1158402: Whole genome shotgun sequencing of Escherichia coli subsp. serovar O157:H7 str. MOD1-EC4139 by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 1.1M spots, 547.2M bases, 382.9Mb downloads

Design: MiSeq deep shotgun sequencing of cultured isolate.
Submitted by: FOOD AND DRUG ADMINISTRATION, CENTER FOR FOOD SAFETY AND APPLIED NUTRITION (CFSAN)
Study: GenomeTrakr Project: US Food and Drug Administration
PRJNA230969 • SRP058582 • All experiments • All runs
show Abstracthide Abstract
Whole genome sequencing of cultured E. coli as part of the US Food and Drug Administration surveillance project for the rapid detection of foodborne contamination events.
Sample:
SAMN03952744 • SRS1039453 • All experiments • All runs
Organism: Escherichia coli
Library:
Name: Escherichia coli str. MOD1-EC4139 shotgun
Instrument: Illumina MiSeq
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Construction protocol: Illumina Nextera XT library created for Escherichia coli subsp. serovar O157:H7 str. MOD1-EC4139.
Spot descriptor:
1  forward251  reverse

Pipeline: show...hide...
NameStepPrev StepProgramVersion
base caller0NULLRTA1.18.54
Runs: 1 run, 1.1M spots, 547.2M bases, 382.9Mb
Run# of Spots# of BasesSizePublished
SRR21739601,139,931547.2M382.9Mb2015-08-18

ID:
1683631

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