Whole-genome sequence of Vibrio parahaemolyticus AHPND-VP14 - SRA

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SRX23511323: Whole-genome sequence of Vibrio parahaemolyticus AHPND-VP14
1 ILLUMINA (Illumina MiSeq) run: 479,915 spots, 142.6M bases, 71.5Mb downloads

Design: Genomic DNA (gDNA) was extracted from a single bacterial colony cultured in TSB broth supplemented with 2.5% NaCl using the Quick-DNA Fungal/Bacterial Miniprep Kit (Zymo Research) and finally eluted in nuclease-free water. The genomic library was prepared following the Illumina DNA Prep protocol (Illumina) and sequenced on the Illumina MiSeq platform (2 x 150 bp paired-end protocol, 300 cycles).

Submitted by: Universidad Autonoma de Sinaloa

Study: Genome sequencing of bacterial pathogens derived from aquaculture in Northwest Mexico

PRJNA1071127 • SRP487822 • All experiments • All runs

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Aquaculture is one of the fastest-growing food-producing sectors worldwide. However, aquatic animal aquaculture is susceptible to various microbial diseases. In this study, the genome of diverse pathogenic bacteria derived from aquaculture practices was gathered to expand genomic resources on the endemic diversity, evolutionary divergence, endemic diversity, virulence, and antimicrobial resistance features of aquaculture-related bacteria in northwestern Mexico.

Sample: Vibrio parahaemolyticus strain AHPND-VP14 was recovered from the pond water of farming Pacific white shrimp (Litopenaeus vannamei) in northwest Mexico

SAMN39706865 • SRS20361790 • All experiments • All runs

Organism: Vibrio parahaemolyticus

Library:

Name: AIG-06

Instrument: Illumina MiSeq

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Runs: 1 run, 479,915 spots, 142.6M bases, 71.5Mb

Run	# of Spots	# of Bases	Size	Published
SRR27848362	479,915	142.6M	71.5Mb	2024-02-02

ID:: 31762625

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