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SRX23535811: gut metagenome from Macaca fascicularis
1 ILLUMINA (Illumina MiSeq) run: 92,117 spots, 55.5M bases, 34.1Mb downloads

Design: V3 and V4 regions of the 16S rRNA gene were amplified with Invitrogen PlatinumTaq DNA Polymerase and barcoded using the Nextera DNA Library Preparation Kit and primers (F primer: 5' TCGTCGGCAGCGTCAGATGTGTATAAGAGACAGCCTACGGGNGGCWGCAG-3', R primer: 5'- GTCTCGTGGGCTCGGAGATGTGTATAAGAGACAGGACTACHVGGGTATCTAATCC-3'). Libraries were constructed and barcoded using the Nextera DNA Library Preparation Kit, normalized to equal concentration, pooled, and sequenced on the Illumina MiSeq.
Submitted by: Queen's University
Study: Changes in Social Environment Impact Primate Gut Microbiome Composition
show Abstracthide Abstract
Prior work in humans and free-ranging nonhuman primates has shown that cohabitation and frequent social interaction can lead to changes in GM composition. However, it is difficult to assess the direction of causation in these studies, and interpretations are complicated by the influence of uncontrolled but correlated factors, such as shared diet. We performed a 15-month longitudinal investigation wherein we disentangled the impacts of diet and social living conditions on GM composition in a captive cohort of 13 male cynomolgus macaques. Our findings decouple the influences that diet and social living have on GM composition and reconcile previous observations in the human and animal literatures. Moreover, the results indicate biological alterations of the gut that may, in part, mediate the relationship between sociality and wellbeing.
Sample:
SAMN39832233 • SRS20384490 • All experiments • All runs
Organism: gut metagenome
Library:
Name: Olaf_Timepoint6
Instrument: Illumina MiSeq
Strategy: AMPLICON
Source: METAGENOMIC
Selection: PCR
Layout: PAIRED
Runs: 1 run, 92,117 spots, 55.5M bases, 34.1Mb
Run# of Spots# of BasesSizePublished
SRR2787396492,11755.5M34.1Mb2024-04-08

ID:
31793209

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