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SRX23699268: WGS of Escherichia coli O2:H6
1 ILLUMINA (Illumina MiSeq) run: 751,251 spots, 411.5M bases, 263.8Mb downloads

Design: Following in vivo conjugation experiments, transconjugants were isolated using selective media. DNA was extracted from these isolates using a standardized extraction protocol. Whole genome libraries were prepared using the Illumina DNA Prep Kit, following manufacturer instructions.
Submitted by: Canadian Food Inspection Agency
Study: Impact of Antibiotic-Induced Gut Dysbiosis on ARG Transfer in Mice
show Abstracthide Abstract
This study investigates the effects of antibiotic-induced gut microbiome perturbations on the conjugative transfer of antibiotic resistance genes (ARGs) in a murine model. Three different antibiotic regimens were administered to simulate clinical, veterinary, and heavy-dose treatments, with a control group receiving no antibiotics. Our aim was to elucidate the relationship between the level of gut dysbiosis and the mobility of ARGs, particularly focusing on the dissemination mechanisms of multi-drug resistance IncA/C plasmids. Mice were inoculated with Salmonella enterica serovar Typhimurium (recipient) followed by a S. Heidelberg chicken farm isolate (donor) carrying the resistance plasmid. The study monitored colonization densities, plasmid transfer events, and changes in the gut microbiota composition and ARG abundance through fecal sampling, quantitative PCR, and 16S rRNA amplicon and whole-genome sequencing. This research underscores the importance of considering gut microbiome health in antibiotic stewardship and AMR mitigation strategies.
Sample: 3-DPI-27
SAMN40034299 • SRS20529472 • All experiments • All runs
Library:
Name: 3-DPI-27
Instrument: Illumina MiSeq
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Runs: 1 run, 751,251 spots, 411.5M bases, 263.8Mb
Run# of Spots# of BasesSizePublished
SRR28048080751,251411.5M263.8Mb2024-05-15

ID:
31983663

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