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DRX511963: NextSeq 1000 paired end sequencing of SAMD00736098
1 ILLUMINA (NextSeq 1000) run: 168,279 spots, 44.8M bases, 17.2Mb downloads

Submitted by: National Institute of Infectious Diseases
Study: High throughput sequence analysis of vgsc gene of West-Nile virus vector Culex pipiens
show Abstracthide Abstract
The northern house mosquito Culex pipiens is one of the most abundant mosquito species in Europe and Italy. C. pipiens plays a critical role in the transmission of at least three viruses circulating at present in Europe: West Nile, Usutu, and Sindbis Virus, with West Nile having the largest epidemiological impact. In Europe only pyrethroids - which target the voltage gated sodium channel (VGSC) and interfere with normal nervous signal transmission - are allowed for adulticidal treatments. Some amino-acid substitutions on VGSC, known as knock-down resistance (kdr) mutations, alter the binding and interaction of the pyrethroid with the VGSC, resulting thus in reduced susceptibility of the mosquito. Here we take advantage of the targeted NGS approach which allows a high coverage sequencing of the whole vgsc gene to detect kdr mutations in C. pipiens in Italy and Europe.
Sample: Field collected Individual Culex pipiens 22PGCx_34
SAMD00736098 • DRS370079 • All experiments • All runs
Library:
Instrument: NextSeq 1000
Strategy: Targeted-Capture
Source: GENOMIC
Selection: Hybrid Selection
Layout: PAIRED
Construction protocol: PCR-free;TruSeq adapter ligation;hybridization capture
Pipeline: show...hide...
StepPrev Step
1NIL
Runs: 1 run, 168,279 spots, 44.8M bases, 17.2Mb
Run# of Spots# of BasesSizePublished
DRR528085168,27944.8M17.2Mb2024-03-25

ID:
32356310

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