Enterobacter hormaechei Genome sequencing and assembly - SRA

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SRX24327941: Enterobacter hormaechei Genome sequencing and assembly
1 ILLUMINA (NextSeq 2000) run: 1.5M spots, 370.4M bases, 119.2Mb downloads

Design: The Illumina NextSeq 2000 platform performed whole genome sequencing of one bacterial DNA sample, generating paired-end reads with a read length of 151 bp. We used FastQC analysis (Andrews, 2010) to check the quality of the data, and then we used Fastp v0.23.4 with the parameters --average_qual 20 and --length_required 35 to trim the adapter and filter the quality. We performed a de-novo genome assembly from the trimmed reads using Unicycler v0.5.0, setting a minimum contig length of 200 bp (Wick et al., 2017). Finally, we conducted genome annotation using Prokka v1.14.5, adhering to genetic code 11 (Seemann et al., 2014).

Submitted by: University of Rajshahi

Study: Enterobacter quasihormaechei strain:Hakim RU_CBWE Genome sequencing and assembly

PRJNA1102997 • SRP503240 • All experiments • All runs

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The current study aims to isolate and identify Enterobacter quasihormaechei, its virulence factor, and antibiotic resistance gene screening in the surface water of a pond at the University of Rajshahi in Bangladesh.

Sample: Enterobacter hormaechei complete genome sequencing and assembly

SAMN41039070 • SRS21089297 • All experiments • All runs

Organism: Enterobacter quasihormaechei

Library:

Name: RU_CBWE

Instrument: NextSeq 2000

Strategy: WGS

Source: GENOMIC

Selection: Restriction Digest

Layout: PAIRED

Runs: 1 run, 1.5M spots, 370.4M bases, 119.2Mb

Run	# of Spots	# of Bases	Size	Published
SRR28762526	1,506,792	370.4M	119.2Mb	2024-04-22

ID:: 32641974

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