U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from BioSample

SRX24345959: GSM8225334: CSP-induced normal cells, biol rep 3; Streptococcus mutans UA159; RNA-Seq
1 ILLUMINA (Illumina MiSeq) run: 1.9M spots, 293.5M bases, 106.6Mb downloads

External Id: GSM8225334_r1
Submitted by: Faculty of Dentistry, University of Toronto
Study: Transcriptome analysis of Streptococcus mutans quorum sensing-induced cells
show Abstracthide Abstract
In the human pathogen Streptococcus mutans, the canonical peptide-based quorum sensing system is an inducible DNA repair system that is pivotal for bacterial survival. Previous work showed that the CSP signaling peptide is a stress-signaling alarmone that controls different stress-induced phenotypes. In this study, we exposed S. mutans to the CSP pheromone to mimic DNA damage conditions. Transcriptome analysis was then performed to evaluate the differential gene expression between the normal stationary phase cells and the CSP-induced stationary phase cells. The data obtained contribute to the understanding of the CSP-induced phenotypes in S. mutans. Overall design: S. mutans cells were induced with the CSP quorum sensing pheromone for 24 hours. The gene expression profiling of the CSP-induced cells was compared to the one of non-induced cells.
Sample: CSP-induced normal cells, biol rep 3
SAMN41061969 • SRS21105646 • All experiments • All runs
Library:
Name: GSM8225334
Instrument: Illumina MiSeq
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: RNA was harvested using the RiboPure-Bacteria purification kit. 0.1 ug of total RNA was used for the construction of sequencing libraries. RNA libraries for RNA-seq were prepared using an Illumina Stranded Total RNA Prep Ligation with Ribo-Zero Plus kit following manufacturer's protocols.
Runs: 1 run, 1.9M spots, 293.5M bases, 106.6Mb
Run# of Spots# of BasesSizePublished
SRR287813911,930,756293.5M106.6Mb2024-04-28

ID:
32660030

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...