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SRX24599418: A case study on a tropical coral reef sea cucumber Stichopus chloronotus revealed by prokaryotic biomarker
1 ILLUMINA (Illumina NovaSeq 6000) run: 72,019 spots, 36M bases, 10.8Mb downloads

Design: A case study on a tropical coral reef sea cucumber Stichopus chloronotus revealed by prokaryotic biomarker
Submitted by: Hainan University
Study: Which is more priority, substrate type or food quality? A case study on a tropical coral reef sea cucumber Stichopus chloronotus revealed by prokaryotic biomarker
show Abstracthide Abstract
In this project, a one-month field study was carried out to reveal the food-habitat relation and the adaptation process of a tropical sea cucumber Stichopus chloronotus with specific habitat preference, using in situ mesocosm method with three single habitat type treatments. Microbial community structure change of gut contents revealed by high throughput sequencing analysis based on 16S rRNA was used as the biomarker, exploring the changes in microbial community structure in the gut contents of S. chloronotus under specific habitat types (sandy bottom, broken coral branches bottom and reef bottom), and revealing their selection ability to specific sediments and prokaryotes.
Sample:
SAMN41446563 • SRS21337348 • All experiments • All runs
Library:
Name: FDMP21H009171-1a_L1_SSO4
Instrument: Illumina NovaSeq 6000
Strategy: AMPLICON
Source: GENOMIC
Selection: PCR
Layout: PAIRED
Runs: 1 run, 72,019 spots, 36M bases, 10.8Mb
Run# of Spots# of BasesSizePublished
SRR2907508972,01936M10.8Mb2024-11-17

ID:
32918160

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