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SRX24716491: Swab of bacterial community in leaf-shelters: 16s
1 ILLUMINA (Illumina MiSeq) run: 37 spots, 9,287 bases, 64,839b downloads

Design: We extracted DNA from the swabs using the DNeasy kit (Qiagen) with slight modifications to the manufactures protocol to increase DNA yield (Kueneman et al. 2014). We then PCR-amplified the V4 region of the bacterial 16S rRNA gene using dual-indexed 515F and 806R barcoded-primers (Kozich et al. 2013). Pooled PCR amplicons of all the samples were purified using a QlAquick Gel Extraction Kit (Qiagen) and sent for sequencing on an Illumina MiSeq sequencer at TUFTs Genomic core facility in Boston, Massachusetts, United States
Submitted by: NCBI
Study: Leaf-shelters facilitate microbial colonization
show Abstracthide Abstract
Arthropods that visit or inhabit plants can contribute to the leaf microbial community, resulting in significant changes in plant-microbe interactions. By artificially constructing leaf shelters, we provide evidence that shelter-building insects influence not only the arthropod community structure but also impact the phyllosphere microbiota. Leaf shelters exhibited higher abundance and richness of arthropods, leading to changes in the associated arthropod community composition. These shelters also altered the composition and community structure of phyllosphere microbiota, promoting greater richness and diversity of bacteria at the phyllosphere. In leaf shelters, microbial diversity increased with the richness and diversity of herbivores. These findings demonstrate the critical role of leaf shelters in structuring arthropod communities by facilitating colonization and influencing microbial communities through altered microhabitats and community interactions.
Sample: Shelter
SAMN41548559 • SRS21440280 • All experiments • All runs
Organism: Quercus alba
Library:
Name: Lib83
Instrument: Illumina MiSeq
Strategy: AMPLICON
Source: GENOMIC
Selection: PCR
Layout: SINGLE
Runs: 1 run, 37 spots, 9,287 bases, 64,839b
Run# of Spots# of BasesSizePublished
SRR29196536379,28764,839b2024-05-27

ID:
33035665

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