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SRX24818370: WGS of P. larvae isolate S559
1 ILLUMINA (Illumina NovaSeq 6000) run: 1.2M spots, 354.9M bases, 117Mb downloads

Design: DNA was extracted from various samples taken from honey bee hives using swabs, matchsticks, smears, or from honey, or honeycomb
Submitted by: NSW Department of Primary Industries
Study: Using whole genome sequencing and phylogenomic techniques to trace and characterise American foulbrood outbreaks within honeybee populations of south-eastern Australia
show Abstracthide Abstract
We investigated the genetic diversity of Paenibacillus larvae within Australia and the feasibility of a genomic tracing system. While Australian isolates were found to be less genetically diverse, nonetheless we found that core-genome SNP genotyping, both within a single apiary and across populations, had the discriminatory power to assist in the trace-forward and trace-back of AFB outbreaks.
Sample:
SAMN41642852 • SRS21532601 • All experiments • All runs
Library:
Name: Plate5_T559
Instrument: Illumina NovaSeq 6000
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Runs: 1 run, 1.2M spots, 354.9M bases, 117Mb
Run# of Spots# of BasesSizePublished
SRR293012721,183,075354.9M117Mb2024-07-10

ID:
33152590

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