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SRX24792844: RNA-Seq of Pseudomonas donghuensis : GacS
1 ILLUMINA (Illumina NovaSeq X) run: 19M spots, 5.7G bases, 1.6Gb downloads

Design: WT bacteria grown in modified King's B Culture grown cell harvested at 8hr post-inoculation (OD .02 start)
Submitted by: University of Pittsburgh
Study: Transcriptions of GacS in Pseudomonas donghuensis strain SVBP6
show Abstracthide Abstract
We combined comparative transcriptomic, proteomic, and metabolomic approaches to identify novel GacS-dependent biosynthetic gene clusters (BGC) and/or extracellular specialized metabolites. Here, we deposit the transcriptomics that aided in pinpointed several GacS-activated gene clusters with biosynthetic functional features that had escaped in silico genome mining tools.
Sample:
SAMN41670802 • SRS21509971 • All experiments • All runs
Library:
Name: SV3_1
Instrument: Illumina NovaSeq X
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: other
Layout: SINGLE
Runs: 1 run, 19M spots, 5.7G bases, 1.6Gb
Run# of Spots# of BasesSizePublished
SRR2927550418,975,2445.7G1.6Gb2024-07-16

ID:
33118182

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