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SRX1643715: Whole genome shotgun sequencing of Salmonella enterica subsp. enterica serovar Heidelberg by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 1.1M spots, 521.2M bases, 327.2Mb downloads

External Id: EXT00173680
Design: MiSeq deep shotgun sequencing of cultured isolate.
Submitted by: FDA Center for Food Safety and Applied Nutrition (CFSAN)
Study: GenomeTrakr Project: Arizona State Public Health Laboratory
PRJNA183847 • SRP028894 • All experiments • All runs
show Abstracthide Abstract
Currently encompasses whole genome sequencing of cultured pathogens as part of a surveillance project for the rapid detection of outbreaks of foodborne illnesses
Sample:
SAMN04218191 • SRS1349695 • All experiments • All runs
Organism: Salmonella enterica subsp. enterica serovar Heidelberg
Library:
Name: Salmonella enterica subsp. enterica serovar Heidelberg Nextera XT shotgun
Instrument: Illumina MiSeq
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Construction protocol: Illumina Nextera XT library created for Salmonella enterica subsp. enterica serovar Heidelberg.
Spot descriptor:
1  forward251  reverse

Pipeline: show...hide...
NameStepPrev StepProgramVersion
base caller0NULLRTA1.8.5
demultiplexer10MiSeq Reporter2.3
Runs: 1 run, 1.1M spots, 521.2M bases, 327.2Mb
Run# of Spots# of BasesSizePublished
SRR32423351,120,275521.2M327.2Mb2016-03-18

ID:
2362398

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