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SRX1659668: Whole genome shotgun sequencing of Salmonella enterica subsp. enterica serovar Saintpaul by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 1.2M spots, 552.4M bases, 345.9Mb downloads

External Id: EXT00175938
Design: MiSeq deep shotgun sequencing of cultured isolate.
Submitted by: FDA Center for Food Safety and Applied Nutrition (CFSAN)
Study: GenomeTrakr Project: Arizona State Public Health Laboratory
PRJNA183847 • SRP028894 • All experiments • All runs
show Abstracthide Abstract
Currently encompasses whole genome sequencing of cultured pathogens as part of a surveillance project for the rapid detection of outbreaks of foodborne illnesses
Sample:
SAMN04218239 • SRS1359725 • All experiments • All runs
Organism: Salmonella enterica subsp. enterica serovar Saintpaul
Library:
Name: Salmonella enterica subsp. enterica serovar Saintpaul Nextera XT shotgun
Instrument: Illumina MiSeq
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Construction protocol: Illumina Nextera XT library created for Salmonella enterica subsp. enterica serovar Saintpaul.
Spot descriptor:
1  forward251  reverse

Pipeline: show...hide...
NameStepPrev StepProgramVersion
base caller0NULLRTA1.8.5
demultiplexer10MiSeq Reporter2.3
Runs: 1 run, 1.2M spots, 552.4M bases, 345.9Mb
Run# of Spots# of BasesSizePublished
SRR32897611,170,724552.4M345.9Mb2016-03-24

ID:
2378367

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