rice phyllsophere microbiome - SRA

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SRX26106420: rice phyllsophere microbiome
1 ILLUMINA (Illumina MiSeq) run: 80,334 spots, 47.7M bases, 30.1Mb downloads

Design: amplified the V3-V4 hypervariable region of the 16S rRNA using standard Illumina primers (forward 5-TCGTCGGCAGCGTCAGATGTGTATAAGAGACAGCCTACGGGNGGCWGCAG-3; reverse 5-GTCTCGTGGGCTCGGAGATGTGTATAAGAGACAGGACTACHVGGGTATCTAATCC)

Submitted by: National Centre for Biological Sciences

Study: Divergence and convergence in epiphytic and endophytic phyllosphere bacterial communities of rice landraces

PRJNA1158963 • SRP531783 • All experiments • All runs

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We analysed the structure and stability of leaf phyllosphere microbiomes of four traditionally cultivated rice landraces and one commercial variety from northeast India grown in the field for three consecutive years, supplemented with opportunistic sampling of 8 other landraces.

Sample: KHOKR42019E

SAMN43790968 • SRS22671848 • All experiments • All runs

Organism: rice paddy metagenome

Library:

Name: S229

Instrument: Illumina MiSeq

Strategy: AMPLICON

Source: METAGENOMIC

Selection: PCR

Layout: PAIRED

Runs: 1 run, 80,334 spots, 47.7M bases, 30.1Mb

Run	# of Spots	# of Bases	Size	Published
SRR30688728	80,334	47.7M	30.1Mb	2024-10-21

ID:: 35223750

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