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SRX26819790: RNA-Seq of Trioza urticae: pooled adult females from the same population as individual TUF20
1 ILLUMINA (Illumina NovaSeq X) run: 59.4M spots, 17.8G bases, 5.5Gb downloads

Design: All samples were extracted with Trizol, followed by Qiagen RNeasy cleanup with on-column DNAse, and sequenced with 150PE reads.
Submitted by: JIC
Study: CALIBER - psyllid assembly
show Abstracthide Abstract
Candidatus Liberibacter solanacearum (Lso) is a bacterium which causes zebra chip disease in potato. Lso exists in different variants (called haplotypes). Different variants can also lead to significant losses in other crops including tomato, carrot, and celery in some parts of the world. Lso is not currently causing widespread damage in the UK despite the bacterium being present here. Essential to understanding the spread of Lso is understanding the insects that carry it. The disease is only transmitted from plant to plant by sap-feeding insects called psyllids. These insects are highly specific, typically feeding on just one or a few host plant species. This means that for disease to occur both the plant-specific psyllid, and a suitable Lso haplotype need to be present. Sequencing of psyllid vectors is an objective of the CALIBER project.
Sample: Pooled sample of Trioza urticae individuals from insectary population: T. urticae were collected from nettle in Norwich, UK, June 2021 and maintained in an insectary colony on nettle plants at JIC, Norwich, UK until October 2021.
SAMN44031938 • SRS23304214 • All experiments • All runs
Organism: Trioza urticae
Library:
Name: TUF_RNAseq
Instrument: Illumina NovaSeq X
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: DNase
Layout: PAIRED
Runs: 1 run, 59.4M spots, 17.8G bases, 5.5Gb
Run# of Spots# of BasesSizePublished
SRR3145095259,409,66417.8G5.5Gb2024-11-25

ID:
36237776

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