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SRX1685734: Whole genome shotgun sequencing of Salmonella enterica subsp. enterica serovar Derby by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 561,691 spots, 272.2M bases, 179.1Mb downloads

External Id: EXT00178210
Design: MiSeq deep shotgun sequencing of cultured isolate.
Submitted by: FDA Center for Food Safety and Applied Nutrition (CFSAN)
Study: GenomeTrakr Project: Thakur Molecular Epidemiology Laboratory, NC State University
PRJNA293224 • SRP070120 • All experiments • All runs
show Abstracthide Abstract
Whole genome sequencing of cultured Salmonella as part of the US Food and Drug Administration surveillance project for the rapid detection of outbreaks of foodborne illnesses.
Sample:
SAMN04431407 • SRS1380684 • All experiments • All runs
Organism: Salmonella enterica subsp. enterica serovar Derby
Library:
Name: Salmonella enterica subsp. enterica serovar Derby Nextera XT shotgun
Instrument: Illumina MiSeq
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Construction protocol: Illumina Nextera XT library created for Salmonella enterica subsp. enterica serovar Derby.
Spot descriptor:
1  forward251  reverse

Pipeline: show...hide...
NameStepPrev StepProgramVersion
base caller0NULLRTA1.8.5
demultiplexer10MiSeq Reporter2.3
Runs: 1 run, 561,691 spots, 272.2M bases, 179.1Mb
Run# of Spots# of BasesSizePublished
SRR3344804561,691272.2M179.1Mb2016-04-07

ID:
2416117

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