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SRX26710117: RNA-seq rat colon : rat 17
1 ILLUMINA (Illumina MiSeq) run: 62,911 spots, 33.9M bases, 18.7Mb downloads

Design: The DNA extraction of colonic content was performed by means of bead beating with a PowerLyzer (Qiagen, Venlo, the Netherlands) and phenol/chloroform extraction (Vilchez-Vargas et al., 2013)
Submitted by: Ghent University
Study: Metabolic consequences and gut microbiome alterations in rats consuming pork vs. a commercial plant-based meat analogue
show Abstracthide Abstract
In the present research, we examined how the consumption of a popular brand of ultra-processed plant-based meat analogues (PBMA) balls would affect gut health and metabolism in rats, compared to the consumption of model pork balls with equivalent contents of protein, fat, carbohydrates, and dry matter. A mixture of herbs was added to the model pork balls during preparation to match the type and amount of herbs used in the commercial PBMA product, after which both products were exposed to equal heating conditions. Following three weeks on the experimental diets, potential alterations in colon microbiota composition, faecal metabolites, gut histology, transcriptomics, and oxidative stress were evaluated. Additionally, we assessed systemic metabolism by NMR-based metabolomics (plasma, urine), oxidative stress, inflammation (CRP), cholesterol (LDL, HDL), lipid depositions, and organ weights.
Sample: Pork
SAMN44720132 • SRS23201174 • All experiments • All runs
Organism: gut metagenome
Library:
Name: 17
Instrument: Illumina MiSeq
Strategy: RNA-Seq
Source: METAGENOMIC
Selection: PCR
Layout: PAIRED
Runs: 1 run, 62,911 spots, 33.9M bases, 18.7Mb
Run# of Spots# of BasesSizePublished
SRR3133272362,91133.9M18.7Mb2024-11-13

ID:
36086519

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