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SRX1621999: Whole genome shotgun sequencing of Listeria monocytogenes serovar 1/2c by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 717,787 spots, 348.5M bases, 229.7Mb downloads

External Id: EXT00170753
Design: MiSeq deep shotgun sequencing of cultured isolate.
Submitted by: FDA Center for Food Safety and Applied Nutrition (CFSAN)
Study: GenomeTrakr project: University of Turin, Department of Veterinary Sciences, Italy
PRJNA304956 • SRP070119 • All experiments • All runs
show Abstracthide Abstract
Whole genome sequencing of cultured Listeria monocytogenes as part of the US Food and Drug Administration surveillance project for the rapid detection of foodborne contamination events.
Sample:
SAMN04530860 • SRS1332163 • All experiments • All runs
Organism: Listeria monocytogenes
Library:
Name: Listeria monocytogenes serovar 1/2c Nextera XT shotgun
Instrument: Illumina MiSeq
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Construction protocol: Illumina Nextera XT library created for Listeria monocytogenes serovar 1/2c.
Spot descriptor:
1  forward251  reverse

Pipeline: show...hide...
NameStepPrev StepProgramVersion
base caller0NULLRTA1.8.5
demultiplexer10MiSeq Reporter2.3
Runs: 1 run, 717,787 spots, 348.5M bases, 229.7Mb
Run# of Spots# of BasesSizePublished
SRR3215371717,787348.5M229.7Mb2016-03-09

ID:
2318659

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