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SRX1686261: Whole genome shotgun sequencing of Listeria monocytogenes serovar 3a by Illumina NextSeq 500
1 ILLUMINA (NextSeq 500) run: 668,151 spots, 194.4M bases, 73.6Mb downloads

External Id: EXT00178759
Design: MiSeq deep shotgun sequencing of cultured isolate.
Submitted by: FDA Center for Food Safety and Applied Nutrition (CFSAN)
Study: GenomeTrakr project: University of Turin, Department of Veterinary Sciences, Italy
PRJNA304956 • SRP070119 • All experiments • All runs
show Abstracthide Abstract
Whole genome sequencing of cultured Listeria monocytogenes as part of the US Food and Drug Administration surveillance project for the rapid detection of foodborne contamination events.
Sample:
SAMN04600014 • SRS1381262 • All experiments • All runs
Organism: Listeria monocytogenes
Library:
Name: Listeria monocytogenes serovar 3a Nextera XT shotgun
Instrument: NextSeq 500
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Construction protocol: Illumina Nextera XT library created for Listeria monocytogenes serovar 3a.
Spot descriptor:
1  forward151  reverse

Pipeline: show...hide...
NameStepPrev StepProgramVersion
base caller0NULLRTA1.8.5
demultiplexer10Bcl2fastq2.1
Runs: 1 run, 668,151 spots, 194.4M bases, 73.6Mb
Run# of Spots# of BasesSizePublished
SRR3345912668,151194.4M73.6Mb2016-04-07

ID:
2416644

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