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SRX1981101: Whole genome shotgun sequencing of Escherichia coli serovar O129:H42 by Illumina NextSeq 500
1 ILLUMINA (NextSeq 500) run: 2.7M spots, 682.9M bases, 283Mb downloads

External Id: EXT00201778
Design: MiSeq deep shotgun sequencing of cultured isolate.
Submitted by: FDA Center for Food Safety and Applied Nutrition (CFSAN)
Study: GenomeTrakr Project: US Food and Drug Administration
PRJNA230969 • SRP058582 • All experiments • All runs
show Abstracthide Abstract
Whole genome sequencing of cultured E. coli as part of the US Food and Drug Administration surveillance project for the rapid detection of foodborne contamination events.
Sample:
SAMN04992235 • SRS1588545 • All experiments • All runs
Organism: Escherichia coli
Library:
Name: Escherichia coli serovar O129:H42 Nextera XT shotgun
Instrument: NextSeq 500
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Construction protocol: Illumina Nextera XT library created for Escherichia coli serovar O129:H42.
Spot descriptor:
1  forward151  reverse

Pipeline: show...hide...
NameStepPrev StepProgramVersion
base caller0NULLRTA1.8.5
demultiplexer10Bcl2fastq2.1
Runs: 1 run, 2.7M spots, 682.9M bases, 283Mb
Run# of Spots# of BasesSizePublished
SRR39570912,729,190682.9M283Mb2016-07-27

ID:
2850423

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