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SRX1991266: Whole genome shotgun sequencing of Escherichia coli serovar O2:H56 by Illumina NextSeq 500
1 ILLUMINA (NextSeq 500) run: 7.7M spots, 1.1G bases, 380.5Mb downloads

External Id: EXT00205024
Design: MiSeq deep shotgun sequencing of cultured isolate.
Submitted by: FDA Center for Food Safety and Applied Nutrition (CFSAN)
Study: GenomeTrakr Project: US Food and Drug Administration
PRJNA230969 • SRP058582 • All experiments • All runs
show Abstracthide Abstract
Whole genome sequencing of cultured E. coli as part of the US Food and Drug Administration surveillance project for the rapid detection of foodborne contamination events.
Sample: Pathogen: environmental/food/other sample from Escherichia sp.
SAMN05440270 • SRS1594065 • All experiments • All runs
Organism: Escherichia sp. MOD1-EC6147
Library:
Name: Escherichia coli serovar O2:H56 Nextera XT shotgun
Instrument: NextSeq 500
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Construction protocol: Illumina Nextera XT library created for Escherichia coli serovar O2:H56.
Spot descriptor:
1  forward151  reverse

Pipeline: show...hide...
NameStepPrev StepProgramVersion
base caller0NULLRTA1.8.5
demultiplexer10Bcl2fastq2.1
Runs: 1 run, 7.7M spots, 1.1G bases, 380.5Mb
Run# of Spots# of BasesSizePublished
SRR39897217,735,8731.1G380.5Mb2016-07-30

ID:
2864907

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