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SRX1989332: Whole genome shotgun sequencing of Escherichia coli serovar O43:H8 by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 1.2M spots, 557.9M bases, 357.1Mb downloads

External Id: EXT00204212
Design: MiSeq deep shotgun sequencing of cultured isolate.
Submitted by: FDA Center for Food Safety and Applied Nutrition (CFSAN)
Study: GenomeTrakr Project: US Food and Drug Administration
PRJNA230969 • SRP058582 • All experiments • All runs
show Abstracthide Abstract
Whole genome sequencing of cultured E. coli as part of the US Food and Drug Administration surveillance project for the rapid detection of foodborne contamination events.
Sample:
SAMN05452865 • SRS1593070 • All experiments • All runs
Organism: Escherichia coli
Library:
Name: Escherichia coli serovar O43:H8 Nextera XT v2 shotgun
Instrument: Illumina MiSeq
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Construction protocol: Illumina Nextera XT v2 library created for Escherichia coli serovar O43:H8.
Spot descriptor:
1  forward251  reverse

Pipeline: show...hide...
NameStepPrev StepProgramVersion
base caller0NULLRTA1.8.5
demultiplexer10MiSeq Reporter2.3
Runs: 1 run, 1.2M spots, 557.9M bases, 357.1Mb
Run# of Spots# of BasesSizePublished
SRR39879811,163,127557.9M357.1Mb2016-07-29

ID:
2861760

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