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SRX2497513: Whole genome shotgun sequencing of Salmonella enterica subsp. enterica by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 852,528 spots, 403.3M bases, 229Mb downloads

External Id: EXT00237114
Design: MiSeq deep shotgun sequencing of cultured isolate.
Submitted by: FDA Center for Food Safety and Applied Nutrition (CFSAN)
Study: GenomeTrakr Project: SDSU Veterinary & Biomedical Sciences/ DOH South Dakota
PRJNA280335 • SRP059853 • All experiments • All runs
show Abstracthide Abstract
Whole genome sequencing of cultured Salmonella enterica as part of the US Food and Drug Administration's WGS surveillance effort for the rapid detection of foodborne illness outbreaks.
Sample:
SAMN06113984 • SRS1924408 • All experiments • All runs
Organism: Salmonella enterica
Library:
Name: Salmonella enterica subsp. enterica Nextera XT shotgun
Instrument: Illumina MiSeq
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Construction protocol: Illumina Nextera XT library created for Salmonella enterica subsp. enterica.
Spot descriptor:
1  forward251  reverse

Pipeline: show...hide...
NameStepPrev StepProgramVersion
base caller0NULLRTA1.8.5
demultiplexer10MiSeq Reporter2.3
Runs: 1 run, 852,528 spots, 403.3M bases, 229Mb
Run# of Spots# of BasesSizePublished
SRR5181394852,528403.3M229Mb2017-01-17

ID:
3620252

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