U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from BioSample

SRX2442219: GSM2438924: Rspo2_Fc_1; Mus musculus; RNA-Seq
1 ILLUMINA (NextSeq 500) run: 104.6M spots, 10.3G bases, 3.4Gb downloads

Submitted by: NCBI (GEO)
Study: Single-cell RNA-seq of Lgr5-eGFP+ intestinal stem cells upon Wnt and R-spondin modulation in vivo
show Abstracthide Abstract
We report the transcriptomic alterations of Lgr5-eGFP+ intestinal stem cells upon Wnt and R-spondin gain-of-function and loss-of-function in vivo Overall design: Lgr5-eGFP+ intestinal stem cells were isolated by FACS following in vivo GOF and LOF Wnt and R-spondin. Mice were treated with intravenous adenovirus encoding agonists and antagonists, then small intestine was harvested from these mice, the tissue was dissociated and cells were collected by FACS. Sorted Lgr5-eGFP(-) cells and Lgr5-eGFP(+) cells following control Ad Fc treatment were used as controls. Two technical replicates were generated for each treatment condition. Please note that each mtx (processed data) file is accompanied with 2 files; a list of genes (i.e. mm10_genes.tsv linked as a Series supplementary file) and a list of cell ids (mm10_barcodes.tsv linked to the corresponding sample), which correspond to the rows and columns of the mtx file (i.e. genes correspond to rows, and barcodes correspond to the columns).
Sample: Rspo2_Fc_1
SAMN06177118 • SRS1876793 • All experiments • All runs
Organism: Mus musculus
Library:
Instrument: NextSeq 500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: epithelial cell preparation from proximal jejunum Cellular suspensions were loaded on a GemCode Single Cell Instrument (10x Genomics, Pleasanton, CA) to generate single cell GEMs. Approximately ~1200 to 2800 cells were loaded per channel. Two biological replicates were generated per sample. Single cell RNA-Seq libraries were prepared using GemCode Single Cell 3’ Gel Bead and Library Kit (now sold as P/N 120230, 120231, 120232, 10x Genomics) following the protocols outlined in Zheng et. al. Sequencing libraries were loaded at 2.1pM on an Illumina NextSeq500 with 2 × 75 paired-end kits using the following read length: 98bp Read1, 14bp I7 Index, 8bp I5 Index and 5bp Read2.
Experiment attributes:
GEO Accession: GSM2438924
Links:
Runs: 1 run, 104.6M spots, 10.3G bases, 3.4Gb
Run# of Spots# of BasesSizePublished
SRR5127956104,599,18310.3G3.4Gb2017-05-04

ID:
3546032

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...