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SRX2464432: GSM2446007: Control_4d_2; Hebeloma cylindrosporum; RNA-Seq
1 ILLUMINA (Illumina HiSeq 2000) run: 53.3M spots, 8.1G bases, 3.2Gb downloads

Submitted by: NCBI (GEO)
Study: The ectomycorrhizal basidiomycete Hebeloma cylindrosporum undergoes early waves of transcriptional reprogramming prior to symbiotic structures differentiation
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Illumina HiSeq2000 technology was used to generate mRNA profiles from Hebeloma cylindrosporum pre-infectious stages (2 and 4 days) compared to control mycelium. Pre-infectious and control mycelia were harvested after 2 and 4 days and used for RNA extraction. Reads of 150 bp were generated and aligned to Hebeloma cylindrosporum reference transcripts (http://genome.jgi-psf.org/Hebcy2) using CLC Genomics Workbench 8.5.1. Overall design: mRNA profiles from Hebeloma cylindrosporum pre-infectious and control mycelium were generated by Illumina HiSeq2000 sequencing (150bp). Three biological replicates were sequenced for Hebeloma cylindrosporum mycelium in contact for 2 and 4 days with Pinus pinaster seedlings as well as for control mycelium at the same time-points.
Sample: Control_4d_2
SAMN06205396 • SRS1896925 • All experiments • All runs
Library:
Instrument: Illumina HiSeq 2000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: Lyophilized mycelia were ground in liquid nitrogen and total RNA was extracted using the "RNeasy Plant Mini Kit" (Qiagen, Courtaboeuf, France). PEG 8000 (20 mg.ml-1) and β-mercaptoethanol (10 µl.ml-1) were added in the RLC buffer (Qiagen). Samples were subsequently purified using the "Total RNA Purification, NucleoBond® RNA/DNA 80" kit (Macherey-Nagel, Hoerdt, France) by following the manufacturer’s recommendations. cDNA libraries were prepared for sequencing using standard Illumina protocols by the Joint Genome Institue (JGI)
Experiment attributes:
GEO Accession: GSM2446007
Links:
Runs: 1 run, 53.3M spots, 8.1G bases, 3.2Gb
Run# of Spots# of BasesSizePublished
SRR514632753,338,4908.1G3.2Gb2017-02-01

ID:
3577396

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