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ERX1859699: Illumina HiSeq 2500 paired end sequencing
1 ILLUMINA (Illumina HiSeq 2500) run: 1M spots, 252.6M bases, 68.2Mb downloads

Design: Illumina sequencing of library DN461105C:B1, constructed from sample accession ERS1274075 for study accession ERP020777. This is part of an Illumina multiplexed sequencing run (20925_2). This submission includes reads tagged with the sequence CGATGTTT.
Submitted by: SC (The Wellcome Trust Sanger Institute)
Study: VRCO_hospital
show Abstracthide Abstract
The project seeks to address a critically important question relating to the acquisition of pathogenic, drug-resistant bacteria by acutely ill hospital patients. The aim is to define reservoirs and transmission pathways relating to the acquisition of Escherichia coli producing extended-spectrum ?-lactamases (ESBL-EC) in a haematology cohort. The overall approach will be to identify numerous reservoirs of ESBL-EC in a geographically defined area, and use bacterial sequencing combined with mathematical modelling to predict transmission routes between them and the hospital cohort. The hypothesis is that interventions to reduce ESBL-EC carriage and disease in humans are reliant on an understanding of these transmission pathways.
Sample: 20925_2#97
SAMEA4362626 • ERS1274075 • All experiments • All runs
Library:
Name: DN461105C:B1
Instrument: Illumina HiSeq 2500
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Construction protocol: Standard
Runs: 1 run, 1M spots, 252.6M bases, 68.2Mb
Run# of Spots# of BasesSizePublished
ERR17959691,010,518252.6M68.2Mb2017-01-17

ID:
3621718

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