U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from BioSample

SRX2724415: Whole genome shotgun sequencing of Salmonella enterica by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 665,815 spots, 334.2M bases, 195.6Mb downloads

External Id: EXT00254689
Design: MiSeq deep shotgun sequencing of cultured isolate.
Submitted by: FDA Center for Food Safety and Applied Nutrition (CFSAN)
Study: GenomeTrakr Project: Arizona State Public Health Laboratory
PRJNA183847 • SRP028894 • All experiments • All runs
show Abstracthide Abstract
Currently encompasses whole genome sequencing of cultured pathogens as part of a surveillance project for the rapid detection of outbreaks of foodborne illnesses
Sample:
SAMN06333937 • SRS2113135 • All experiments • All runs
Organism: Salmonella enterica
Library:
Name: Salmonella enterica Nextera XT shotgun
Instrument: Illumina MiSeq
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Construction protocol: Illumina Nextera XT library created for Salmonella enterica.
Spot descriptor:
1  forward251  reverse

Pipeline: show...hide...
NameStepPrev StepProgramVersion
base caller0NULLRTA1.8.5
demultiplexer10MiSeq Reporter2.3
Runs: 1 run, 665,815 spots, 334.2M bases, 195.6Mb
Run# of Spots# of BasesSizePublished
SRR5434381665,815334.2M195.6Mb2017-04-11

ID:
3927520

Supplemental Content

Related information

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...