U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from BioSample

SRX3572127: Mapped reads for uncultivated Syntrophomonas bacterium UBA9860 genome recovered from ERX1109758
1 ILLUMINA (Illumina HiSeq 2000) run: 885,048 spots, 250.4M bases, 121.6Mb downloads

Design: Reads from ERX1109758 were mapped with BWA-MEM v0.7.12-r1039 to a metagenome assembly produced with CLC v4.4.1. The resulting mapping file was then pruned to the contigs comprising the UBA9860 genome.
Submitted by: University of Queensland
Study: Collection of 3,087 bacterial metagenome-assembled genomes recovered from metagenomes available from the Sequence Read Archive.
PRJNA417962 • SRP130174 • All experiments • All runs
show Abstracthide Abstract
Collection of 3,087 bacterial metagenome-assembled genomes (MAGs) recovered from metagenomes available from the Sequence Read Archive. These MAGs comprise part of the data set used to define a standardised bacterial taxonomy based on a concatenated protein phylogeny that conservatively removes polyphyletic groups and normalises ranks based on relative evolutionary divergence.
Sample: Uncultivated Syntrophomonas bacterium UBA9860 genome recovered from ERX1109758
SAMN08017416 • SRS2843097 • All experiments • All runs
Organism: Syntrophomonas sp.
Library:
Name: UBA9860_library
Instrument: Illumina HiSeq 2000
Strategy: WGS
Source: METAGENOMIC
Selection: RANDOM
Layout: PAIRED
Runs: 1 run, 885,048 spots, 250.4M bases, 121.6Mb
Run# of Spots# of BasesSizePublished
SRR6482337885,048250.4M121.6Mb2018-03-05

ID:
4957629

Supplemental Content

Related information

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...