U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from BioSample

SRX3575671: Mapped reads for uncultivated Lachnospiraceae bacterium UBA9739 genome recovered from SRX290711
1 ILLUMINA (Illumina HiSeq 2000) run: 154,566 spots, 32.6M bases, 17.5Mb downloads

Design: Reads from SRX290711 were mapped with BWA-MEM v0.7.12-r1039 to a metagenome assembly produced with CLC v4.4.1. The resulting mapping file was then pruned to the contigs comprising the UBA9739 genome.
Submitted by: University of Queensland
Study: Collection of 3,087 bacterial metagenome-assembled genomes recovered from metagenomes available from the Sequence Read Archive.
PRJNA417962 • SRP130174 • All experiments • All runs
show Abstracthide Abstract
Collection of 3,087 bacterial metagenome-assembled genomes (MAGs) recovered from metagenomes available from the Sequence Read Archive. These MAGs comprise part of the data set used to define a standardised bacterial taxonomy based on a concatenated protein phylogeny that conservatively removes polyphyletic groups and normalises ranks based on relative evolutionary divergence.
Sample: Uncultivated Lachnospiraceae bacterium UBA9739 genome recovered from SRX290711
SAMN08017514 • SRS2845555 • All experiments • All runs
Organism: Lachnospiraceae bacterium
Library:
Name: UBA9739_library
Instrument: Illumina HiSeq 2000
Strategy: WGS
Source: METAGENOMIC
Selection: RANDOM
Layout: PAIRED
Runs: 1 run, 154,566 spots, 32.6M bases, 17.5Mb
Run# of Spots# of BasesSizePublished
SRR6485716154,56632.6M17.5Mb2018-02-23

ID:
4961173

Supplemental Content

Related information

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...