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SRX3577286: Mapped reads for uncultivated Shigella bacterium UBA11643 genome recovered from SRX212536
1 ILLUMINA (Illumina HiSeq 2000) run: 4.1M spots, 755.3M bases, 375.2Mb downloads

Design: Reads from SRX212536 were mapped with BWA-MEM v0.7.12-r1039 to a metagenome assembly produced with CLC v4.4.1. The resulting mapping file was then pruned to the contigs comprising the UBA11643 genome.
Submitted by: University of Queensland
Study: Collection of 3,087 bacterial metagenome-assembled genomes recovered from metagenomes available from the Sequence Read Archive.
PRJNA417962 • SRP130174 • All experiments • All runs
show Abstracthide Abstract
Collection of 3,087 bacterial metagenome-assembled genomes (MAGs) recovered from metagenomes available from the Sequence Read Archive. These MAGs comprise part of the data set used to define a standardised bacterial taxonomy based on a concatenated protein phylogeny that conservatively removes polyphyletic groups and normalises ranks based on relative evolutionary divergence.
Sample: Uncultivated Shigella bacterium UBA11643 genome recovered from SRX212536
SAMN08017516 • SRS2847018 • All experiments • All runs
Organism: Shigella sp.
Library:
Name: UBA11643_library
Instrument: Illumina HiSeq 2000
Strategy: WGS
Source: METAGENOMIC
Selection: RANDOM
Layout: PAIRED
Runs: 1 run, 4.1M spots, 755.3M bases, 375.2Mb
Run# of Spots# of BasesSizePublished
SRR64874894,122,407755.3M375.2Mb2018-02-23

ID:
4962788

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