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SRX3572774: Mapped reads for uncultivated Shigella bacterium UBA10780 genome recovered from ERX493927
1 ILLUMINA (Illumina HiSeq 2000) run: 151,987 spots, 22.2M bases, 14.5Mb downloads

Design: Reads from ERX493927 were mapped with BWA-MEM v0.7.12-r1039 to a metagenome assembly produced with CLC v4.4.1. The resulting mapping file was then pruned to the contigs comprising the UBA10780 genome.
Submitted by: University of Queensland
Study: Collection of 3,087 bacterial metagenome-assembled genomes recovered from metagenomes available from the Sequence Read Archive.
PRJNA417962 • SRP130174 • All experiments • All runs
show Abstracthide Abstract
Collection of 3,087 bacterial metagenome-assembled genomes (MAGs) recovered from metagenomes available from the Sequence Read Archive. These MAGs comprise part of the data set used to define a standardised bacterial taxonomy based on a concatenated protein phylogeny that conservatively removes polyphyletic groups and normalises ranks based on relative evolutionary divergence.
Sample: Uncultivated Shigella bacterium UBA10780 genome recovered from ERX493927
SAMN08017740 • SRS2843744 • All experiments • All runs
Organism: Shigella sp.
Library:
Name: UBA10780_library
Instrument: Illumina HiSeq 2000
Strategy: WGS
Source: METAGENOMIC
Selection: RANDOM
Layout: PAIRED
Runs: 1 run, 151,987 spots, 22.2M bases, 14.5Mb
Run# of Spots# of BasesSizePublished
SRR6482710151,98722.2M14.5Mb2018-03-05

ID:
4958276

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