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SRX3576271: Mapped reads for uncultivated Shigella bacterium UBA8064 genome recovered from SRX212508
1 ILLUMINA (Illumina HiSeq 2000) run: 3.2M spots, 584.6M bases, 295.4Mb downloads

Design: Reads from SRX212508 were mapped with BWA-MEM v0.7.12-r1039 to a metagenome assembly produced with CLC v4.4.1. The resulting mapping file was then pruned to the contigs comprising the UBA8064 genome.
Submitted by: University of Queensland
Study: Collection of 3,087 bacterial metagenome-assembled genomes recovered from metagenomes available from the Sequence Read Archive.
PRJNA417962 • SRP130174 • All experiments • All runs
show Abstracthide Abstract
Collection of 3,087 bacterial metagenome-assembled genomes (MAGs) recovered from metagenomes available from the Sequence Read Archive. These MAGs comprise part of the data set used to define a standardised bacterial taxonomy based on a concatenated protein phylogeny that conservatively removes polyphyletic groups and normalises ranks based on relative evolutionary divergence.
Sample: Uncultivated Shigella bacterium UBA8064 genome recovered from SRX212508
SAMN08018443 • SRS2846152 • All experiments • All runs
Organism: Shigella sp.
Library:
Name: UBA8064_library
Instrument: Illumina HiSeq 2000
Strategy: WGS
Source: METAGENOMIC
Selection: RANDOM
Layout: PAIRED
Runs: 1 run, 3.2M spots, 584.6M bases, 295.4Mb
Run# of Spots# of BasesSizePublished
SRR64866263,157,177584.6M295.4Mb2018-02-23

ID:
4961773

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