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SRX3575621: Mapped reads for uncultivated Shigella bacterium UBA9183 genome recovered from SRX212541
1 ILLUMINA (Illumina HiSeq 2000) run: 3.2M spots, 591.4M bases, 295.9Mb downloads

Design: Reads from SRX212541 were mapped with BWA-MEM v0.7.12-r1039 to a metagenome assembly produced with CLC v4.4.1. The resulting mapping file was then pruned to the contigs comprising the UBA9183 genome.
Submitted by: University of Queensland
Study: Collection of 3,087 bacterial metagenome-assembled genomes recovered from metagenomes available from the Sequence Read Archive.
show Abstracthide Abstract
Collection of 3,087 bacterial metagenome-assembled genomes (MAGs) recovered from metagenomes available from the Sequence Read Archive. These MAGs comprise part of the data set used to define a standardised bacterial taxonomy based on a concatenated protein phylogeny that conservatively removes polyphyletic groups and normalises ranks based on relative evolutionary divergence.
Sample: Uncultivated Shigella bacterium UBA9183 genome recovered from SRX212541
SAMN08018579 • SRS2845505 • All experiments • All runs
Organism: Shigella sp.
Library:
Name: UBA9183_library
Instrument: Illumina HiSeq 2000
Strategy: WGS
Source: METAGENOMIC
Selection: RANDOM
Layout: PAIRED
Runs: 1 run, 3.2M spots, 591.4M bases, 295.9Mb
Run# of Spots# of BasesSizePublished
SRR64857663,202,503591.4M295.9Mb2018-02-23

ID:
4961123

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