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SRX3576142: Mapped reads for uncultivated Gammaproteobacteria bacterium UBA8254 genome recovered from ERX386657
1 ILLUMINA (Illumina HiSeq 1000) run: 88,555 spots, 18.9M bases, 7.5Mb downloads

Design: Reads from ERX386657 were mapped with BWA-MEM v0.7.12-r1039 to a metagenome assembly produced with CLC v4.4.1. The resulting mapping file was then pruned to the contigs comprising the UBA8254 genome.
Submitted by: University of Queensland
Study: Collection of 3,087 bacterial metagenome-assembled genomes recovered from metagenomes available from the Sequence Read Archive.
PRJNA417962 • SRP130174 • All experiments • All runs
show Abstracthide Abstract
Collection of 3,087 bacterial metagenome-assembled genomes (MAGs) recovered from metagenomes available from the Sequence Read Archive. These MAGs comprise part of the data set used to define a standardised bacterial taxonomy based on a concatenated protein phylogeny that conservatively removes polyphyletic groups and normalises ranks based on relative evolutionary divergence.
Sample: Uncultivated Gammaproteobacteria bacterium UBA8254 genome recovered from ERX386657
SAMN08019111 • SRS2846025 • All experiments • All runs
Organism: Gammaproteobacteria bacterium
Library:
Name: UBA8254_library
Instrument: Illumina HiSeq 1000
Strategy: WGS
Source: METAGENOMIC
Selection: RANDOM
Layout: PAIRED
Runs: 1 run, 88,555 spots, 18.9M bases, 7.5Mb
Run# of Spots# of BasesSizePublished
SRR648626588,55518.9M7.5Mb2018-02-23

ID:
4961644

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