U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from BioSample

SRX3577455: Mapped reads for uncultivated Bacteroidales bacterium UBA12170 genome recovered from SRX149542
1 ILLUMINA (Illumina Genome Analyzer IIx) run: 921,543 spots, 170.8M bases, 99Mb downloads

Design: Reads from SRX149542 were mapped with BWA-MEM v0.7.12-r1039 to a metagenome assembly produced with CLC v4.4.1. The resulting mapping file was then pruned to the contigs comprising the UBA12170 genome.
Submitted by: University of Queensland
Study: Collection of 3,087 bacterial metagenome-assembled genomes recovered from metagenomes available from the Sequence Read Archive.
show Abstracthide Abstract
Collection of 3,087 bacterial metagenome-assembled genomes (MAGs) recovered from metagenomes available from the Sequence Read Archive. These MAGs comprise part of the data set used to define a standardised bacterial taxonomy based on a concatenated protein phylogeny that conservatively removes polyphyletic groups and normalises ranks based on relative evolutionary divergence.
Sample: Uncultivated Bacteroidales bacterium UBA12170 genome recovered from SRX149542
SAMN08019503 • SRS2847182 • All experiments • All runs
Library:
Name: UBA12170_library
Instrument: Illumina Genome Analyzer IIx
Strategy: WGS
Source: METAGENOMIC
Selection: RANDOM
Layout: PAIRED
Runs: 1 run, 921,543 spots, 170.8M bases, 99Mb
Run# of Spots# of BasesSizePublished
SRR6487830921,543170.8M99Mb2018-02-23

ID:
4962957

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...