U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from BioSample

SRX3572249: Mapped reads for uncultivated Sphaerochaeta bacterium UBA10021 genome recovered from SRX764827
1 ILLUMINA (Illumina HiSeq 2000) run: 144,296 spots, 35.9M bases, 18.5Mb downloads

Design: Reads from SRX764827 were mapped with BWA-MEM v0.7.12-r1039 to a metagenome assembly produced with CLC v4.4.1. The resulting mapping file was then pruned to the contigs comprising the UBA10021 genome.
Submitted by: University of Queensland
Study: Collection of 3,087 bacterial metagenome-assembled genomes recovered from metagenomes available from the Sequence Read Archive.
PRJNA417962 • SRP130174 • All experiments • All runs
show Abstracthide Abstract
Collection of 3,087 bacterial metagenome-assembled genomes (MAGs) recovered from metagenomes available from the Sequence Read Archive. These MAGs comprise part of the data set used to define a standardised bacterial taxonomy based on a concatenated protein phylogeny that conservatively removes polyphyletic groups and normalises ranks based on relative evolutionary divergence.
Sample: Uncultivated Sphaerochaeta bacterium UBA10021 genome recovered from SRX764827
SAMN08019773 • SRS2843220 • All experiments • All runs
Organism: Sphaerochaeta sp.
Library:
Name: UBA10021_library
Instrument: Illumina HiSeq 2000
Strategy: WGS
Source: METAGENOMIC
Selection: RANDOM
Layout: PAIRED
Runs: 1 run, 144,296 spots, 35.9M bases, 18.5Mb
Run# of Spots# of BasesSizePublished
SRR6482215144,29635.9M18.5Mb2018-03-05

ID:
4957751

Supplemental Content

Related information

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...