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SRX3576475: Mapped reads for uncultivated Gammaproteobacteria bacterium UBA9070 genome recovered from ERX639144
1 ILLUMINA (Illumina HiSeq 1000) run: 56,708 spots, 12.1M bases, 5.7Mb downloads

Design: Reads from ERX639144 were mapped with BWA-MEM v0.7.12-r1039 to a metagenome assembly produced with CLC v4.4.1. The resulting mapping file was then pruned to the contigs comprising the UBA9070 genome.
Submitted by: University of Queensland
Study: Collection of 3,087 bacterial metagenome-assembled genomes recovered from metagenomes available from the Sequence Read Archive.
PRJNA417962 • SRP130174 • All experiments • All runs
show Abstracthide Abstract
Collection of 3,087 bacterial metagenome-assembled genomes (MAGs) recovered from metagenomes available from the Sequence Read Archive. These MAGs comprise part of the data set used to define a standardised bacterial taxonomy based on a concatenated protein phylogeny that conservatively removes polyphyletic groups and normalises ranks based on relative evolutionary divergence.
Sample: Uncultivated Gammaproteobacteria bacterium UBA9070 genome recovered from ERX639144
SAMN08019922 • SRS2846357 • All experiments • All runs
Organism: Gammaproteobacteria bacterium
Library:
Name: UBA9070_library
Instrument: Illumina HiSeq 1000
Strategy: WGS
Source: METAGENOMIC
Selection: RANDOM
Layout: PAIRED
Runs: 1 run, 56,708 spots, 12.1M bases, 5.7Mb
Run# of Spots# of BasesSizePublished
SRR648642256,70812.1M5.7Mb2018-02-23

ID:
4961977

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