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SRX3541320: Draft Genomic Sequencing Of Potential Extraintestinal Pathogenic Escherichia coli B7S10 Isolated From Retail Chicken Skin
1 ILLUMINA (Illumina MiSeq) run: 2.4M spots, 729.6M bases, 239.2Mb downloads

Design: Illumina Paired-end sequencing of sample SAMN08327341 GENOMIC DNA
Submitted by: (BaseSpace)
Study: Draft Genomic Sequencing Of Potential Extraintestinal Pathogenic Escherichia coli B7S10 Isolated From Retail Chicken Skin
show Abstracthide Abstract
Extraintestinal Pathogenic Escherichia coli are frequent contaminants in retail poultry meat. They are associated with ulcerative colitis, sepsis, and urinary tract infections. However, most Extraintestinal pathogenic E.coli (ExPEC) isolates which have published genomic sequences are clinical isolates, not food isolates. In this study we have determined the incidence and prevalence of ExPEC from the skin of retail chicken meat products and are characterizing them using whole genome sequencing.
Sample: Escherichia coli Isolate B7S10
SAMN08327341 • SRS2818516 • All experiments • All runs
Library:
Name: B7S10Trim
Instrument: Illumina MiSeq
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Construction protocol: DNA extraction was performed using the Qiagen Blood tissue kit. The genomic DNA was fragmented using the Illumina Nextera Flex Kit. Sequencing was performed using the Illumina Miniseq platform.
Spot descriptor:
forward152  reverse

Pipeline: show...hide...
Runs: 1 run, 2.4M spots, 729.6M bases, 239.2Mb
Run# of Spots# of BasesSizePublished
SRR64503422,439,988729.6M239.2Mb2018-01-09

ID:
4919070

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