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SRX4781241: FWSconsortium, WGS of E. coli: Unknown Specimen Type
1 ILLUMINA (Illumina Genome Analyzer IIx) run: 1.6M spots, 381.3M bases, 244.8Mb downloads

Design: MasterPure Complete DNA purification kit; Covaris E210 physical fragmentation; TruSeq DNA library kit 2x150bp paired end on Illumina GA IIx
Submitted by: Public Health Agency of Canada
Study: Food and Water Safety consortium
show Abstracthide Abstract
The food and water safety pilot project is a comprehensive strategy that integrates multidisciplinary components from diverse federal science sources to address two main goals. The first is to enhance food and water safety by developing genomics-based methods for pathogen isolation, detection and characterisation. The second goal is to develop a federally integrated system to manage, store and provide open access to genomic data related to food and water borne pathogens. The model organisms for this study are Shiga-toxin Producing Escherchia coli (STEC) and Salmonella Enteritidis from Environmental, animal husbandry, food samples, and medical isolates.
Sample: stx1a
SAMN08797090 • SRS3602524 • All experiments • All runs
Library:
Name: FWSEC0144
Instrument: Illumina Genome Analyzer IIx
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Runs: 1 run, 1.6M spots, 381.3M bases, 244.8Mb
Run# of Spots# of BasesSizePublished
SRR79473671,648,172381.3M244.8Mb2019-01-22

ID:
6466548

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