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SRX3926114: Whole genome shotgun sequencing of FSIS11808836 by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 1.3M spots, 627.9M bases, 375.7Mb downloads

Design: MiSeq deep shotgun sequencing of cultured isolate.
Submitted by: United States Department of Agriculture, Food Safety and Inspection Service (USDA-FSIS)
Study: FSIS NARMS Escherichia coli
PRJNA292667 • SRP066916 • All experiments • All runs
show Abstracthide Abstract
Whole genome sequencing of foodborne pathogens as part of the US Department of Agriculture surveillance project for NARMS.
Sample:
SAMN08909985 • SRS3160079 • All experiments • All runs
Organism: Escherichia coli
Library:
Name: FSIS11808836 Nextera XT shotgun library
Instrument: Illumina MiSeq
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Construction protocol: Illumina Nextera XT library created for FSIS11808836.
Spot descriptor:
1  forward251  reverse

Pipeline: show...hide...
NameStepPrev StepProgramVersion
base caller0NULLRTA1.18.54
Runs: 1 run, 1.3M spots, 627.9M bases, 375.7Mb
Run# of Spots# of BasesSizePublished
SRR69863801,273,703627.9M375.7Mb2018-04-12

ID:
5384860

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