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SRX4402238: WGS: E. coli female bladder
1 ILLUMINA (Illumina MiSeq) run: 1.3M spots, 628M bases, 369.7Mb downloads

Design: DNA extracted using Qiagen UltraClean Microbial Kit. Library preparation using Nextera kit. 250x2 paired-end reads.
Submitted by: Loyola University Chicago
Study: Female Urinary Microbiota Genome Sequencing
show Abstracthide Abstract
Recently, bacterial communities (microbiota) have been discovered in the female bladder. Thus, the “sterile urine” paradigm is no longer valid. In an effort to provide a comprehensive view of the newly discovered female urinary microbiota (FUM), we have established an Enhanced Quantitative Urine Culture (EQUC) protocol. EQUC isolates bacteria from 75-90% of urine samples deemed 'no growth' by the standard clinical microbiology urine culture method. We have begun to sequence and annotate the genomes of these isolated bacteria.
Sample:
SAMN09665168 • SRS3556764 • All experiments • All runs
Library:
Name: Ecoli_UMB0731_CP53
Instrument: Illumina MiSeq
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Runs: 1 run, 1.3M spots, 628M bases, 369.7Mb
Run# of Spots# of BasesSizePublished
SRR75342791,289,390628M369.7Mb2018-07-18

ID:
5980774

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