Illumina whole genome shotgun sequencing of genomic DNA paired-end li... - SRA

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SRX360750: Illumina whole genome shotgun sequencing of genomic DNA paired-end library 'Pond-230612' containing sample 'ORNL_W42_D04'
7 ILLUMINA (Illumina HiSeq 2000) runs: 1.4M spots, 283.8M bases, 162.8Mb downloads

UUID: 29d577ac-b6b4-4c00-b204-3c5dae5e5205

Design: Illumina sequencing of Pelomonas sp. ORNL_6EZ5-Gt_4_Pl1-44 via random selection

Submitted by: Broad Institute (BI)

Study: HMP reference genome

PRJNA197091 • SRP030584 • All experiments • All runs

Sample: Generic sample from Pelomonas sp. ORNL_6EZ5-Gt_4_Pl1-44

SAMN00706780 • SRS256244 • All experiments • All runs

Organism: Pelomonas sp. ORNL_6EZ5-Gt_4_Pl1-44

Library:

Name: Pond-230612

Instrument: Illumina HiSeq 2000

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Spot descriptor:

1 forward102 reverse

Experiment attributes: (show all 13 attributes...) (hide...)

analysis_type: AssemblyWithoutReference

data_type: WGS

gssr_id: 302683.0

library_type: WholeGenomeShotgun

lsid: broadinstitute.org:bsp.prod.sample:41WNM

material_type: DNA:DNA Somatic

product_order: PDO-526

product_part_number: P-WG-0004

project: G32679

research_project: RP-129

root_sample_id: SM-3QFIX

sample_id: SM-41WNM

work_request: 35919

Pipeline: show...hide...

Name	Step	Program	Version	Notes
base caller	2013-05-08 19:07:00.0	GAPipeline	RTA1.15.19.5	Sequencer Application 1.6.8.6

Runs: 7 runs, 1.4M spots, 283.8M bases, 162.8Mb

Run	# of Spots	# of Bases	Size	Published
SRR1004015	204,558	41.3M	23.7Mb	2013-09-27
SRR1004016	201,487	40.7M	23.3Mb	2013-09-27
SRR1004017	197,461	39.9M	22.9Mb	2013-09-27
SRR1004018	199,550	40.3M	23.1Mb	2013-09-27
SRR1004019	200,578	40.5M	23.2Mb	2013-09-27
SRR1004020	199,807	40.4M	23.2Mb	2013-09-27
SRR1004021	201,561	40.7M	23.4Mb	2013-09-27

ID:: 509955

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