Illumina whole genome shotgun sequencing of genomic DNA paired-end li... - SRA

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SRX360733: Illumina whole genome shotgun sequencing of genomic DNA paired-end library 'Pond-230560' containing sample 'ORNL_V42_A01'
7 ILLUMINA (Illumina HiSeq 2000) runs: 23.1M spots, 4.7G bases, 2.8Gb downloads

UUID: b2da6016-a733-4e47-868b-7f61987d2105

Design: Illumina sequencing of Pelomonas sp. ORNL_6EZ5-Gt_10_Pl1-97 via random selection

Submitted by: Broad Institute (BI)

Study: HMP reference genome

PRJNA217630 • SRP030569 • All experiments • All runs

Sample: Generic sample from Pelomonas sp. ORNL_6EZ5-Gt_10_Pl1-97

SAMN00691397 • SRS255219 • All experiments • All runs

Organism: Pelomonas sp. ORNL_6EZ5-Gt_10_Pl1-97

Library:

Name: Pond-230560

Instrument: Illumina HiSeq 2000

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Spot descriptor:

1 forward102 reverse

Experiment attributes: (show all 13 attributes...) (hide...)

analysis_type: AssemblyWithoutReference

data_type: WGS

gssr_id: 302700.0

library_type: WholeGenomeShotgun

lsid: broadinstitute.org:bsp.prod.sample:41WM5

material_type: DNA:DNA Somatic

product_order: PDO-526

product_part_number: P-WG-0004

project: G32695

research_project: RP-129

root_sample_id: SM-3QFJU

sample_id: SM-41WM5

work_request: 35919

Pipeline: show...hide...

Name	Step	Program	Version	Notes
base caller	2013-05-08 19:07:00.0	GAPipeline	RTA1.15.19.5	Sequencer Application 1.6.8.6

Runs: 7 runs, 23.1M spots, 4.7G bases, 2.8Gb

Run	# of Spots	# of Bases	Size	Published
SRR1003938	3,297,166	666M	412Mb	2013-09-27
SRR1003939	3,272,500	661M	407.1Mb	2013-09-27
SRR1003940	3,313,842	669.4M	413.2Mb	2013-09-27
SRR1003941	3,260,681	658.7M	405.9Mb	2013-09-27
SRR1003942	3,301,623	666.9M	411.7Mb	2013-09-27
SRR1003943	3,341,718	675M	416.9Mb	2013-09-27
SRR1003944	3,292,593	665.1M	410.8Mb	2013-09-27

ID:: 509938

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