Illumina whole genome shotgun sequencing of genomic DNA paired-end li... - SRA

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SRX391574: Illumina whole genome shotgun sequencing of genomic DNA paired-end library 'Pond-291785' containing sample 'Staphylococcus aureus M44988'
2 ILLUMINA (Illumina HiSeq 2000) runs: 5.5M spots, 1.1G bases, 610.5Mb downloads

UUID: 6d7eaad4-8ca5-4111-894e-7ac54d119ee5

Design: Illumina sequencing of Staphylococcus aureus M44988 via random selection

Submitted by: Broad Institute (BI)

Study: MRSA CLEAR

PRJNA224528 • SRP033950 • All experiments • All runs

Sample: Generic sample from Staphylococcus aureus M44988

SAMN02383817 • SRS514808 • All experiments • All runs

Organism: Staphylococcus aureus M44988

Library:

Name: Pond-291785

Instrument: Illumina HiSeq 2000

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Spot descriptor:

1 forward102 reverse

Experiment attributes: (show all 13 attributes...) (hide...)

analysis_type: AssemblyWithReference

data_type: WGS

gssr_id: 427848.0

library_type: WholeGenomeShotgun

lsid: broadinstitute.org:bsp.prod.sample:52PMH

material_type: DNA:DNA Somatic

product_order: PDO-2339

product_part_number: P-WG-0004

project: G50587

research_project: RP-509

root_sample_id: SM-4RMJG

sample_id: SM-52PMH

work_request: 38888

Pipeline: show...hide...

Name	Step	Program	Version	Notes
base caller	2013-11-29 16:10:35.0	GAPipeline	RTA1.17.21.3	Sequencer Application 2.1.35.0

Runs: 2 runs, 5.5M spots, 1.1G bases, 610.5Mb

Run	# of Spots	# of Bases	Size	Published
SRR1049259	2,764,293	558.4M	306.4Mb	2013-12-13
SRR1049260	2,739,814	553.4M	304.1Mb	2013-12-13

ID:: 562328

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