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SRX17884927: Microbacterium oxydans strain DSM 20578
1 ILLUMINA (Illumina NovaSeq 6000) run: 11.8M spots, 1.8G bases, 516.4Mb downloads

Design: Library preparation was performed using an adapted protocol of the NEB (New England BioLabs) prep kit. Paired-end sequence reads (PE150) were generated using the NovaSeq 6000 platform (Illumina). Quality check, trimming of the raw sequence reads and de novo genome assembly were performed using the Shovill pipeline (https://github.com/tseemann/shovill), aiming at an average coverage of 100x. Contigs shorter than 500 bp were excluded from the final assembly. Quality check of the assemblies was performed using QUAST
Submitted by: Universite Alger1
Study: Microbacterium oxydans strain:DSM 20578 Genome sequencing and assembly
PRJNA573493 • SRP402535 • All experiments • All runs
show Abstracthide Abstract
Description of new bacterial species
Sample:
SAMN12811485 • SRS15402172 • All experiments • All runs
Organism: Microbacterium oxydans
Library:
Name: SAMN12811485
Instrument: Illumina NovaSeq 6000
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: SINGLE
Runs: 1 run, 11.8M spots, 1.8G bases, 516.4Mb
Run# of Spots# of BasesSizePublished
SRR2189886811,798,9391.8G516.4Mb2022-10-14

ID:
24816511

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