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SRX016595:  analysis of MeOHExtract-12hr
1 ILLUMINA (Illumina Genome Analyzer II) run: 18.1M spots, 1.8G bases, 1.2Gb downloads

Submitted by: BC Cancer Agency Michael Smith Genome Sciences Centre (BCCAGSC)
Study: WGS sequencing
show Abstracthide Abstract
<a href="http://www.thetriaproject.ca/index.php">The Tria Project</a> led by the <a href="http://www.michaelsmith.ubc.ca/faculty/bohlmann">Michael Smith Laboratories at UBC</a> and <a href="http://www.bcgsc.bc.ca/">BCCA Genome Sciences Centre</a> sequenced the ~32.5 Mb genome of <i>Grosmannia clavigera</i> strain kw1407 at ~50X coverage using a hybrid whole genome shotgun (WGS) sequencing method. WGS projects ACXQ00000000 and ACYC00000000 are assembled from the same sequence reads using different methodologies. For ACXQ00000000 (Sanger-454-IlluminaPA) raw Illumina PE reads were assembled using Velvet, and 454 and Sanger reads were assembled with Forge. The two sets of contigs were then combined. For ACYC00000000 (Sanger-454-IlluminaDA) there was no pre-assembly. Filtered genomic DNA reads from Sanger, 454 and Illumina were assembled using the Forge genome assembler.
Sample: Generic sample from Grosmannia clavigera
SAMN00008768 • SRS010389 • All experiments • All runs
Library:
Name: MeOHExtract-12hr
Instrument: Illumina Genome Analyzer II
Strategy: EST
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Spot descriptor:
forward52  reverse

Runs: 1 run, 18.1M spots, 1.8G bases, 1.2Gb
Run# of Spots# of BasesSizePublished
SRR03565218,082,3111.8G1.2Gb2010-02-20

ID:
17700

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