Illumina whole genome shotgun sequencing of genomic DNA paired-end li... - SRA

SRX375545: Illumina whole genome shotgun sequencing of genomic DNA paired-end library 'Pond-281320' containing sample 'Staphylococcus aureus M1140'
2 ILLUMINA (Illumina HiSeq 2000) runs: 5.1M spots, 1G bases, 447.7Mb downloads

UUID: ce38d414-2f37-41c3-a25a-9624fc17ab2f

Design: Illumina sequencing of Staphylococcus aureus M1140 via random selection

Submitted by: Broad Institute (BI)

Study: MRSA Surveillance II

PRJNA220003 • SRP032861 • All experiments • All runs

Sample: Generic sample from Staphylococcus aureus M1140

SAMN02360810 • SRS501251 • All experiments • All runs

Organism: Staphylococcus aureus M1140

Library:

Name: Pond-281320

Instrument: Illumina HiSeq 2000

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Spot descriptor:

1 forward102 reverse

Experiment attributes: (show all 13 attributes...) (hide...)

analysis_type: AssemblyWithReference

data_type: WGS

gssr_id: 407728.0

library_type: WholeGenomeShotgun

lsid: broadinstitute.org:bsp.prod.sample:4WBHJ

material_type: DNA:DNA Somatic

product_order: PDO-2122

product_part_number: P-WG-0004

project: G48502

research_project: RP-433

root_sample_id: SM-4CVU1

sample_id: SM-4WBHJ

work_request: 38311

Pipeline: show...hide...

Name	Step	Program	Version	Notes
base caller	2013-11-04 13:06:09.0	GAPipeline	RTA1.17.21.3	Sequencer Application 2.1.35.0

Runs: 2 runs, 5.1M spots, 1G bases, 447.7Mb

Run	# of Spots	# of Bases	Size	Published
SRR1028057	2,579,230	521M	229.2Mb	2013-11-11
SRR1028058	2,485,712	502.1M	218.5Mb	2013-11-11

ID:: 537441

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