Illumina whole genome shotgun sequencing of genomic DNA paired-end li... - SRA

SRX375605: Illumina whole genome shotgun sequencing of genomic DNA paired-end library 'Pond-281285' containing sample 'Staphylococcus aureus M1336'
2 ILLUMINA (Illumina HiSeq 2000) runs: 5.3M spots, 1.1G bases, 470.2Mb downloads

UUID: 42b4032b-64f7-4504-8729-ff12aac27d0a

Design: Illumina sequencing of Staphylococcus aureus M1336 via random selection

Submitted by: Broad Institute (BI)

Study: MRSA Surveillance II

PRJNA220163 • SRP032919 • All experiments • All runs

Sample: Generic sample from Staphylococcus aureus M1336

SAMN02360970 • SRS501311 • All experiments • All runs

Organism: Staphylococcus aureus M1336

Library:

Name: Pond-281285

Instrument: Illumina HiSeq 2000

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Spot descriptor:

1 forward102 reverse

Experiment attributes: (show all 13 attributes...) (hide...)

analysis_type: AssemblyWithReference

data_type: WGS

gssr_id: 407692.0

library_type: WholeGenomeShotgun

lsid: broadinstitute.org:bsp.prod.sample:4WBGI

material_type: DNA:DNA Somatic

product_order: PDO-2122

product_part_number: P-WG-0004

project: G48475

research_project: RP-433

root_sample_id: SM-4CQPT

sample_id: SM-4WBGI

work_request: 38311

Pipeline: show...hide...

Name	Step	Program	Version	Notes
base caller	2013-11-04 13:06:09.0	GAPipeline	RTA1.17.21.3	Sequencer Application 2.1.35.0

Runs: 2 runs, 5.3M spots, 1.1G bases, 470.2Mb

Run	# of Spots	# of Bases	Size	Published
SRR1028148	2,596,546	524.5M	229.1Mb	2013-11-11
SRR1043909	2,703,187	546M	241.1Mb	2013-12-05

ID:: 537501

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Sequence Read Archive

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