Illumina whole genome shotgun sequencing of genomic DNA paired-end li... - SRA

SRX566913: Illumina whole genome shotgun sequencing of genomic DNA paired-end library 'Pond-318768' containing sample 'VET0200R'
4 ILLUMINA (Illumina HiSeq 2000) runs: 13.8M spots, 2.8G bases, 1.3Gb downloads

UUID: 0a80248c-54fa-4a9e-8b23-ecfe5a56cc0e

Design: Illumina sequencing of Staphylococcus aureus VET0200R via random selection

Submitted by: Broad Institute (BI)

Study: MRSA ST398

PRJNA228591 • SRP042776 • All experiments • All runs

Sample: Generic sample from Staphylococcus aureus VET0200R

SAMN02404083 • SRS626788 • All experiments • All runs

Organism: Staphylococcus aureus VET0200R

Library:

Name: Pond-318768

Instrument: Illumina HiSeq 2000

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Spot descriptor:

1 forward102 reverse

Experiment attributes: (show all 13 attributes...) (hide...)

analysis_type: AssemblyWithReference

data_type: WGS

gssr_id: 471529.0

library_type: WholeGenomeShotgun

lsid: broadinstitute.org:bsp.prod.sample:5CLG2

material_type: DNA:DNA Somatic

product_order: PDO-2557

product_part_number: P-WG-0004

project: G55316

research_project: RP-513

root_sample_id: SM-4Q5NS

sample_id: SM-5CLG2

work_request: 39368

Pipeline: show...hide...

Name	Step	Program	Version	Notes
base caller	2014-02-01 14:58:37.0	GAPipeline	RTA1.17.21.3	Sequencer Application 2.1.35.0

Runs: 4 runs, 13.8M spots, 2.8G bases, 1.3Gb

Run	# of Spots	# of Bases	Size	Published
SRR1328313	3,446,035	696.1M	341Mb	2014-06-03
SRR1342133	3,421,459	691.1M	335.6Mb	2014-06-05
SRR1342367	3,444,337	695.8M	338.6Mb	2014-06-05
SRR1344697	3,475,868	702.1M	340.2Mb	2014-06-06

ID:: 809730

SRA

Sequence Read Archive

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